MEDOC - Multi Experiment Data & Operation Center » NetDRMS_8.12

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h1. Environment

h2. Virtual Machine description

Test machine is a virtual machine on a ProxMox environment.

Physically stored on inf-proxmox2

VM Name : sdo3

VM id : 801

memory : 32.00GB

CPU : 16 CPUs (4 X 4 cores)

Hard Disk 1 : 64 GB (OS + NetDRMS software) - stored on NFS-HA

Hard Disk 2 : 1 TB (Databases) - Stored localy

Not in HA configuration. VM Backup each day (for OS).

Guest OS : Debian 8.1

Guest kernel : Linux sdo3 3.16.0-4-amd64 #1 SMP Debian 3.16.7-ckt11-1 (2015-05-24) x86_64 GNU/Linux

h2. Java installation

<pre>

# aptitude install openjdk-7-jre

</pre>

h2. Manual install of postgresql

h3. Prerequisites

<pre>

# apt-get --purge remove postgresql*

# wget https://ftp.postgresql.org/pub/source/v9.4.4/postgresql-9.4.4.tar.gz

# tar -xzvf postgresql-9.4.4.tar.gz

</pre>

Before compiling, I verify that patch required by NetDRMS (voir [[ici|http://vso.stanford.edu/netdrms/pginst.html]]) was really present in source files :

_src/backend/utils/misc/guc.c_ and _src/bin/pg_dump/pg_dump.c_

<pre>

# apt-get update

# apt-get upgrade

# apt-get install gcc make libreadline-dev minizip

</pre>

h3. Installation

<pre>

# ./configure

# make

# su

# make install

# adduser postgres

</pre>

h3. Test database

<pre>

# mkdir /usr/local/pgsql/data

# chown postgres /usr/local/pgsql/data

# su - postgres

# /usr/local/pgsql/bin/initdb -D /usr/local/pgsql/data

# /usr/local/pgsql/bin/postgres -D /usr/local/pgsql/data >logfile 2>&1 &

# /usr/local/pgsql/bin/createdb test

# /usr/local/pgsql/bin/psql test

</pre>

h3. Shared postgresql library

<pre>

# vi /etc/ld.so.conf/libc.conf

</pre>

add :

<pre>

/usr/local/pgsql/lib

</pre>

h3. Boot start-up

We create an init script in order to start postgresql on boot

<pre>

# vi /etc/init.d/postgresql

</pre>

Content :

<pre>

#! /bin/sh

# chkconfig: 2345 98 02

# description: PostgreSQL RDBMS

# This is an example of a start/stop script for SysV-style init, such

# as is used on Linux systems.  You should edit some of the variables

# and maybe the 'echo' commands.

#

# Place this file at /etc/init.d/postgresql (or

# /etc/rc.d/init.d/postgresql) and make symlinks to

#   /etc/rc.d/rc0.d/K02postgresql

#   /etc/rc.d/rc1.d/K02postgresql

#   /etc/rc.d/rc2.d/K02postgresql

#   /etc/rc.d/rc3.d/S98postgresql

#   /etc/rc.d/rc4.d/S98postgresql

#   /etc/rc.d/rc5.d/S98postgresql

# Or, if you have chkconfig, simply:

# chkconfig --add postgresql

#

# Proper init scripts on Linux systems normally require setting lock

# and pid files under /var/run as well as reacting to network

# settings, so you should treat this with care.

# Original author:  Ryan Kirkpatrick <pgsql@rkirkpat.net>

# $PostgreSQL: pgsql/contrib/start-scripts/linux,v 1.8 2006/07/13 14:44:33 petere Exp $

## EDIT FROM HERE

# Installation prefix

prefix=/usr/local/pgsql

# Data directory

PGDATA="/usr/local/pgsql/data"

# Who to run the postmaster as, usually "postgres".  (NOT "root")

PGUSER=postgres

# Where to keep a log file

PGLOG="$PGDATA/serverlog"

## STOP EDITING HERE

# The path that is to be used for the script

PATH=/usr/local/sbin:/usr/local/bin:/usr/local/pgsql/bin:/sbin:/bin:/usr/sbin:/usr/bin

# What to use to start up the postmaster (we do NOT use pg_ctl for this,

# as it adds no value and can cause the postmaster to misrecognize a stale

# lock file)

DAEMON="$prefix/bin/postmaster"

# What to use to shut down the postmaster

PGCTL="$prefix/bin/pg_ctl"

set -e

# Only start if we can find the postmaster.

test -x $DAEMON || exit 0

# Parse command line parameters.

case $1 in

  start)

        echo -n "Starting PostgreSQL: "

        su - $PGUSER -c "$DAEMON -D '$PGDATA' &" >>$PGLOG 2>&1

        echo "ok"

        ;;

  stop)

        echo -n "Stopping PostgreSQL: "

        su - $PGUSER -c "$PGCTL stop -D '$PGDATA' -s -m fast"

        echo "ok"

        ;;

  restart)

        echo -n "Restarting PostgreSQL: "

        su - $PGUSER -c "$PGCTL stop -D '$PGDATA' -s -m fast -w"

        su - $PGUSER -c "$DAEMON -D '$PGDATA' &" >>$PGLOG 2>&1

        echo "ok"

        ;;

  reload)

        echo -n "Reload PostgreSQL: "

        su - $PGUSER -c "$PGCTL reload -D '$PGDATA' -s"

        echo "ok"

        ;;

  status)

        su - $PGUSER -c "$PGCTL status -D '$PGDATA'"

        ;;

  *)

        # Print help

        echo "Usage: $0 {start|stop|restart|reload|status}" 1>&2

        exit 1

        ;;

esac

exit 0

</pre>

h3. Install additional modules

Nous avons besoin de dblink pour les trigger entre bases de données

<pre>

root@sdo3:~# cd /Downloads/postgresql-9.4.4/contrib/dblink

make install

</pre>

h4. ias_sdo

<pre>

root@sdo3:~/Downloads/postgresql-9.4.4/contrib/dblink# /usr/local/pgsql/bin/psql ias_sdo -p5432 -U postgres < dblink--1.1.sql 

Use "CREATE EXTENSION dblink" to load this file.

root@sdo3:~/Downloads/postgresql-9.4.4/contrib/dblink# /usr/local/pgsql/bin/psql ias_sdo -p5432 -U postgres

psql (9.4.4)

Type "help" for help.

ias_sdo_monitor=# CREATE EXTENSION dblink ;

CREATE EXTENSION

</pre>

h4. ias_sdo_sums

<pre>

root@sdo3:~/Downloads/postgresql-9.4.4/contrib/dblink# /usr/local/pgsql/bin/psql ias_sdo_sums -p5434 -U postgres < dblink--1.1.sql 

Use "CREATE EXTENSION dblink" to load this file.

root@sdo3:~/Downloads/postgresql-9.4.4/contrib/dblink# /usr/local/pgsql/bin/psql ias_sdo_sums -p5434 -U postgres

psql (9.4.4)

Type "help" for help.

ias_sdo_monitor=# CREATE EXTENSION dblink ;

CREATE EXTENSION

</pre>

h4. ias_sdo_monitor

<pre>

root@sdo3:~# cd /Downloads/postgresql-9.4.4/contrib/dblink

make install

root@sdo3:~/Downloads/postgresql-9.4.4/contrib/dblink# /usr/local/pgsql/bin/psql ias_sdo_monitor -p5436 -U postgres < dblink--1.1.sql 

Use "CREATE EXTENSION dblink" to load this file.

root@sdo3:~/Downloads/postgresql-9.4.4/contrib/dblink# /usr/local/pgsql/bin/psql ias_sdo_monitor -p5436 -U postgres

psql (9.4.4)

Type "help" for help.

ias_sdo_monitor=# CREATE EXTENSION dblink ;

ERROR:  type "dblink_pkey_results" already exists

ias_sdo_monitor=# drop table pgWatch;

ERROR:  table "pgwatch" does not exist

ias_sdo_monitor=# drop type  dblink_pkey_results ;

DROP TYPE

ias_sdo_monitor=# CREATE EXTENSION dblink ;

CREATE EXTENSION

ias_sdo_monitor=# \q

</pre>