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Pablo Alingery, 13/03/2017 16:55
python2.7 OK¶
production@sdo3:/usr/local/pySitools2_1.0$ python setup.py test -q
running test
running egg_info
writing requirements to pySitools2_1.0.egg-info/requires.txt
error: [Errno 13] Permission denied: 'pySitools2_1.0.egg-info/requires.txt'
production@sdo3:/usr/local/pySitools2_1.0$ sudo bash
[sudo] password for production:
root@sdo3:/usr/local/pySitools2_1.0# python setup.py test -q
running test
running egg_info
writing requirements to pySitools2_1.0.egg-info/requires.txt
writing pySitools2_1.0.egg-info/PKG-INFO
writing top-level names to pySitools2_1.0.egg-info/top_level.txt
writing dependency_links to pySitools2_1.0.egg-info/dependency_links.txt
reading manifest file 'pySitools2_1.0.egg-info/SOURCES.txt'
writing manifest file 'pySitools2_1.0.egg-info/SOURCES.txt'
running build_ext
####Test gaia_search#############################
Loading GAIA-DEM Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
10 results returned
.####Test media_search #############################
server parameter not specified, default value is set : server='http://medoc-sdo.ias.u-psud.fr'
series parameter not specified, default value is set : series='aia.lev1'
Loading MEDIA Sitools2 client : http://medoc-sdo.ias.u-psud.fr
288 results returned
.####Test gaia_get#############################
Loading GAIA-DEM Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
10 results returned
Download file DEM_aia_2012-08-10T00_05_temp.fits completed
Download file DEM_aia_2012-08-10T00_05_em.fits completed
Download file DEM_aia_2012-08-10T00_05_chi2.fits completed
Download file DEM_aia_2012-08-10T00_05_width.fits completed
Download file DEM_aia_2012-08-10T01_05_temp.fits completed
Download file DEM_aia_2012-08-10T01_05_em.fits completed
Download file DEM_aia_2012-08-10T01_05_width.fits completed
Download file DEM_aia_2012-08-10T01_05_chi2.fits completed
Download file DEM_aia_2012-08-10T02_05_em.fits completed
Download file DEM_aia_2012-08-10T02_05_width.fits completed
Download file DEM_aia_2012-08-10T02_05_temp.fits completed
Download file DEM_aia_2012-08-10T02_05_chi2.fits completed
Download file DEM_aia_2012-08-10T03_05_width.fits completed
Download file DEM_aia_2012-08-10T03_05_temp.fits completed
Download file DEM_aia_2012-08-10T03_05_em.fits completed
Download file DEM_aia_2012-08-10T03_05_chi2.fits completed
Download file DEM_aia_2012-08-10T04_05_chi2.fits completed
Download file DEM_aia_2012-08-10T04_05_width.fits completed
Download file DEM_aia_2012-08-10T04_05_temp.fits completed
Download file DEM_aia_2012-08-10T04_05_em.fits completed
Download file DEM_aia_2012-08-10T05_05_em.fits completed
Download file DEM_aia_2012-08-10T05_05_width.fits completed
Download file DEM_aia_2012-08-10T05_05_temp.fits completed
Download file DEM_aia_2012-08-10T05_05_chi2.fits completed
Download file DEM_aia_2012-08-10T06_05_chi2.fits completed
Download file DEM_aia_2012-08-10T06_05_em.fits completed
Download file DEM_aia_2012-08-10T06_05_width.fits completed
Download file DEM_aia_2012-08-10T06_05_temp.fits completed
Download file DEM_aia_2012-08-10T07_05_chi2.fits completed
Download file DEM_aia_2012-08-10T07_05_width.fits completed
Download file DEM_aia_2012-08-10T07_05_temp.fits completed
Download file DEM_aia_2012-08-10T07_05_em.fits completed
Download file DEM_aia_2012-08-10T08_05_temp.fits completed
Download file DEM_aia_2012-08-10T08_05_em.fits completed
Download file DEM_aia_2012-08-10T08_05_chi2.fits completed
Download file DEM_aia_2012-08-10T08_05_width.fits completed
Download file DEM_aia_2012-08-10T09_05_temp.fits completed
Download file DEM_aia_2012-08-10T09_05_em.fits completed
Download file DEM_aia_2012-08-10T09_05_width.fits completed
Download file DEM_aia_2012-08-10T09_05_chi2.fits completed
.####Test idoc-medoc_search #############################
Loading MEDIA Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
861 results returned
.####Test idoc-solar-portal-test nbr projects ###############
1 projects detected
[
Project object display() :
resources list :
0) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasets
1) http://idoc-medoc-test.ias.u-psud.fr/project/solar/forms
2) http://idoc-medoc-test.ias.u-psud.fr/project/solar/opensearch
3) http://idoc-medoc-test.ias.u-psud.fr/project/solar/graph
4) http://idoc-medoc-test.ias.u-psud.fr/project/solar/feeds
5) http://idoc-medoc-test.ias.u-psud.fr/project/solar/clientFeeds/{feedsId}
6) http://idoc-medoc-test.ias.u-psud.fr/project/solar/services
7) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject
8) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject/{formId}
9) http://idoc-medoc-test.ias.u-psud.fr/project/solar/projectModules
10) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasetViews
11) http://idoc-medoc-test.ias.u-psud.fr/project/solar/guiServices
12) http://idoc-medoc-test.ias.u-psud.fr/project/solar/]
.####Test media_search #############################
series parameter not specified, default value is set : series='aia.lev1'
Loading MEDIA Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
288 results returned
.####Test media nbr projects #################################
2 projects detected
.####Test idoc-medoc NbrDatasets #############################
1 projects detected
('Nombre de projets : ', 1)
Project object display() :
resources list :
0) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasets
1) http://idoc-medoc-test.ias.u-psud.fr/project/solar/forms
2) http://idoc-medoc-test.ias.u-psud.fr/project/solar/opensearch
3) http://idoc-medoc-test.ias.u-psud.fr/project/solar/graph
4) http://idoc-medoc-test.ias.u-psud.fr/project/solar/feeds
5) http://idoc-medoc-test.ias.u-psud.fr/project/solar/clientFeeds/{feedsId}
6) http://idoc-medoc-test.ias.u-psud.fr/project/solar/services
7) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject
8) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject/{formId}
9) http://idoc-medoc-test.ias.u-psud.fr/project/solar/projectModules
10) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasetViews
11) http://idoc-medoc-test.ias.u-psud.fr/project/solar/guiServices
12) http://idoc-medoc-test.ias.u-psud.fr/project/solar/
Nbr datasets : 75
.####Test media_get #############################
server parameter not specified, default value is set : server='http://medoc-sdo.ias.u-psud.fr'
series parameter not specified, default value is set : series='aia.lev1'
Loading MEDIA Sitools2 client : http://medoc-sdo.ias.u-psud.fr
2 results returned
Download file aia.lev1_335A_2012-08-10T00-00-26.image_lev1.fits completed
Download file aia.lev1_304A_2012-08-10T00-00-31.image_lev1.fits completed
.
----------------------------------------------------------------------
Ran 9 tests in 16.795s
OK
python3.4 KO¶
update-alternatives --config python
There are 2 choices for the alternative python (providing /usr/bin/python).
Selection Path Priority Status
------------------------------------------------------------
0 /usr/bin/python3.4 2 auto mode
* 1 /usr/bin/python2.7 1 manual mode
2 /usr/bin/python3.4 2 manual mode
Press enter to keep the current choice[*], or type selection number: 2
update-alternatives: using /usr/bin/python3.4 to provide /usr/bin/python (python) in manual mode
update-alternatives: error: error creating symbolic link `/etc/alternatives/python.dpkg-tmp': Permission denied
production@sdo3:~$ sudo update-alternatives --config python
[sudo] password for production:
Sorry, user production is not allowed to execute '/usr/sbin/update-alternatives --config python' as root on sdo3.ias.u-psud.fr.
production@sdo3:~$ sudo bash
[sudo] password for production:
root@sdo3:/home/production# sudo update-alternatives --config python
There are 2 choices for the alternative python (providing /usr/bin/python).
Selection Path Priority Status
------------------------------------------------------------
0 /usr/bin/python3.4 2 auto mode
* 1 /usr/bin/python2.7 1 manual mode
2 /usr/bin/python3.4 2 manual mode
Press enter to keep the current choice[*], or type selection number: 2
update-alternatives: using /usr/bin/python3.4 to provide /usr/bin/python (python) in manual mode
root@sdo3:/home/production# cd /usr/local/pySitools2_1.0/
root@sdo3:/usr/local/pySitools2_1.0# ./reinstall_pySitools2.sh
pip3
Exception:
Traceback (most recent call last):
File "/usr/local/lib/python3.4/dist-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/usr/local/lib/python3.4/dist-packages/pip/commands/install.py", line 272, in run
with self._build_session(options) as session:
File "/usr/local/lib/python3.4/dist-packages/pip/basecommand.py", line 72, in _build_session
insecure_hosts=options.trusted_hosts,
File "/usr/local/lib/python3.4/dist-packages/pip/download.py", line 329, in __init__
self.headers["User-Agent"] = user_agent()
File "/usr/local/lib/python3.4/dist-packages/pip/download.py", line 93, in user_agent
from pip._vendor import distro
File "/usr/local/lib/python3.4/dist-packages/pip/_vendor/distro.py", line 1050, in <module>
_distro = LinuxDistribution()
File "/usr/local/lib/python3.4/dist-packages/pip/_vendor/distro.py", line 594, in __init__
if include_lsb else {}
File "/usr/local/lib/python3.4/dist-packages/pip/_vendor/distro.py", line 933, in _get_lsb_release_info
raise subprocess.CalledProcessError(code, cmd, stdout)
subprocess.CalledProcessError: Command 'lsb_release -a' returned non-zero exit status 1
Traceback (most recent call last):
File "/usr/local/bin/pip3", line 9, in <module>
load_entry_point('pip==9.0.1', 'console_scripts', 'pip3')()
File "/usr/local/lib/python3.4/dist-packages/pip/__init__.py", line 233, in main
return command.main(cmd_args)
File "/usr/local/lib/python3.4/dist-packages/pip/basecommand.py", line 251, in main
timeout=min(5, options.timeout)) as session:
File "/usr/local/lib/python3.4/dist-packages/pip/basecommand.py", line 72, in _build_session
insecure_hosts=options.trusted_hosts,
File "/usr/local/lib/python3.4/dist-packages/pip/download.py", line 329, in __init__
self.headers["User-Agent"] = user_agent()
File "/usr/local/lib/python3.4/dist-packages/pip/download.py", line 93, in user_agent
from pip._vendor import distro
File "/usr/local/lib/python3.4/dist-packages/pip/_vendor/distro.py", line 1050, in <module>
_distro = LinuxDistribution()
File "/usr/local/lib/python3.4/dist-packages/pip/_vendor/distro.py", line 594, in __init__
if include_lsb else {}
File "/usr/local/lib/python3.4/dist-packages/pip/_vendor/distro.py", line 933, in _get_lsb_release_info
raise subprocess.CalledProcessError(code, cmd, stdout)
subprocess.CalledProcessError: Command 'lsb_release -a' returned non-zero exit status 1
Update and correct pySitools2 ok for python3¶
see https://github.com/MedocIAS/pySitools2_1.0/commit/41d3da5039d18032fa9cb09b76f619207ab5276b
root@sdo3:/usr/local/pySitools2_1.0# python3 setup.py test -q
running test
running egg_info
writing dependency_links to pySitools2_1.0.egg-info/dependency_links.txt
writing top-level names to pySitools2_1.0.egg-info/top_level.txt
writing requirements to pySitools2_1.0.egg-info/requires.txt
writing pySitools2_1.0.egg-info/PKG-INFO
reading manifest file 'pySitools2_1.0.egg-info/SOURCES.txt'
writing manifest file 'pySitools2_1.0.egg-info/SOURCES.txt'
running build_ext
####Test gaia_search#############################
Loading GAIA-DEM Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
10 results returned
.####Test media_search #############################
server parameter not specified, default value is set : server='http://medoc-sdo.ias.u-psud.fr'
series parameter not specified, default value is set : series='aia.lev1'
Loading MEDIA Sitools2 client : http://medoc-sdo.ias.u-psud.fr
288 results returned
.####Test gaia_get#############################
Loading GAIA-DEM Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
10 results returned
Download file results/DEM_aia_2012-08-10T00_05_width.fits completed
Download file results/DEM_aia_2012-08-10T00_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T00_05_em.fits completed
Download file results/DEM_aia_2012-08-10T00_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T01_05_em.fits completed
Download file results/DEM_aia_2012-08-10T01_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T01_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T01_05_width.fits completed
Download file results/DEM_aia_2012-08-10T02_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T02_05_em.fits completed
Download file results/DEM_aia_2012-08-10T02_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T02_05_width.fits completed
Download file results/DEM_aia_2012-08-10T03_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T03_05_width.fits completed
Download file results/DEM_aia_2012-08-10T03_05_em.fits completed
Download file results/DEM_aia_2012-08-10T03_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T04_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T04_05_em.fits completed
Download file results/DEM_aia_2012-08-10T04_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T04_05_width.fits completed
Download file results/DEM_aia_2012-08-10T05_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T05_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T05_05_width.fits completed
Download file results/DEM_aia_2012-08-10T05_05_em.fits completed
Download file results/DEM_aia_2012-08-10T06_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T06_05_width.fits completed
Download file results/DEM_aia_2012-08-10T06_05_em.fits completed
Download file results/DEM_aia_2012-08-10T06_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T07_05_width.fits completed
Download file results/DEM_aia_2012-08-10T07_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T07_05_em.fits completed
Download file results/DEM_aia_2012-08-10T07_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T08_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T08_05_width.fits completed
Download file results/DEM_aia_2012-08-10T08_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T08_05_em.fits completed
Download file results/DEM_aia_2012-08-10T09_05_temp.fits completed
Download file results/DEM_aia_2012-08-10T09_05_em.fits completed
Download file results/DEM_aia_2012-08-10T09_05_chi2.fits completed
Download file results/DEM_aia_2012-08-10T09_05_width.fits completed
.####Test idoc-medoc_search #############################
Loading MEDIA Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
861 results returned
.####Test idoc-solar-portal-test nbr projects ###############
1 projects detected
[
Project object display() :
Medoc-Solar-Portal
description : Solar datasets
uri : /solar
url : http://idoc-medoc-test.ias.u-psud.fr/project/solar
resources list :
0) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasets
1) http://idoc-medoc-test.ias.u-psud.fr/project/solar/forms
2) http://idoc-medoc-test.ias.u-psud.fr/project/solar/opensearch
3) http://idoc-medoc-test.ias.u-psud.fr/project/solar/graph
4) http://idoc-medoc-test.ias.u-psud.fr/project/solar/feeds
5) http://idoc-medoc-test.ias.u-psud.fr/project/solar/clientFeeds/{feedsId}
6) http://idoc-medoc-test.ias.u-psud.fr/project/solar/services
7) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject
8) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject/{formId}
9) http://idoc-medoc-test.ias.u-psud.fr/project/solar/projectModules
10) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasetViews
11) http://idoc-medoc-test.ias.u-psud.fr/project/solar/guiServices
12) http://idoc-medoc-test.ias.u-psud.fr/project/solar/]
.####User Test media_search & metadata_search #############################
server parameter not specified, default value is set : server='http://medoc-sdo.ias.u-psud.fr'
series parameter not specified, default value is set : series='aia.lev1'
cadence parameter not specified, default value for aia.lev1 is set : cadence=[1m]
Loading MEDIA Sitools2 client : http://medoc-sdo.ias.u-psud.fr
60 results returned
server parameter not specified, default value is set : server='http://medoc-sdo.ias.u-psud.fr'
[{'quality': 0, 'date__obs': 1230681653.8368313}, {'quality': 0, 'date__obs': 1230681713.8368154}, {'quality': 0, 'date__obs': 1230681773.8368478}]
.####Test media_search #############################
series parameter not specified, default value is set : series='aia.lev1'
Loading MEDIA Sitools2 client : http://idoc-medoc-test.ias.u-psud.fr
288 results returned
.####Test media nbr projects #################################
2 projects detected
.####Test idoc-medoc NbrDatasets #############################
1 projects detected
Nombre de projets : 1
Project object display() :
Medoc-Solar-Portal
description : Solar datasets
uri : /solar
url : http://idoc-medoc-test.ias.u-psud.fr/project/solar
resources list :
0) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasets
1) http://idoc-medoc-test.ias.u-psud.fr/project/solar/forms
2) http://idoc-medoc-test.ias.u-psud.fr/project/solar/opensearch
3) http://idoc-medoc-test.ias.u-psud.fr/project/solar/graph
4) http://idoc-medoc-test.ias.u-psud.fr/project/solar/feeds
5) http://idoc-medoc-test.ias.u-psud.fr/project/solar/clientFeeds/{feedsId}
6) http://idoc-medoc-test.ias.u-psud.fr/project/solar/services
7) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject
8) http://idoc-medoc-test.ias.u-psud.fr/project/solar/formsProject/{formId}
9) http://idoc-medoc-test.ias.u-psud.fr/project/solar/projectModules
10) http://idoc-medoc-test.ias.u-psud.fr/project/solar/datasetViews
11) http://idoc-medoc-test.ias.u-psud.fr/project/solar/guiServices
12) http://idoc-medoc-test.ias.u-psud.fr/project/solar/
Nbr datasets : 75
.####Test media_get #############################
server parameter not specified, default value is set : server='http://medoc-sdo.ias.u-psud.fr'
series parameter not specified, default value is set : series='aia.lev1'
Loading MEDIA Sitools2 client : http://medoc-sdo.ias.u-psud.fr
2 results returned
Download file results/aia.lev1_335A_2012-08-10T00-00-26.image_lev1.fits completed
Download file results/aia.lev1_304A_2012-08-10T00-00-31.image_lev1.fits completed
.
----------------------------------------------------------------------
Ran 10 tests in 17.875s
OK