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779bac69
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Marc NICOLAS
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package fr.ias.sitools.vo.tap;
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import adql.parser.ADQLParser;
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import adql.parser.ParseException;
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import adql.query.ADQLQuery;
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import adql.translator.ADQLTranslator;
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import adql.translator.PostgreSQLTranslator;
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import adql.translator.TranslationException;
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import fr.cnes.sitools.common.exception.SitoolsException;
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import fr.cnes.sitools.dataset.DataSetApplication;
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import fr.cnes.sitools.dataset.converter.business.ConverterChained;
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import fr.cnes.sitools.dataset.database.DatabaseRequest;
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import fr.cnes.sitools.dataset.database.DatabaseRequestFactory;
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import fr.cnes.sitools.dataset.database.DatabaseRequestParameters;
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import fr.cnes.sitools.dataset.database.common.DataSetExplorerUtil;
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import fr.cnes.sitools.dataset.dto.ColumnConceptMappingDTO;
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import fr.cnes.sitools.dataset.dto.DictionaryMappingDTO;
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import fr.cnes.sitools.dataset.model.Column;
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import fr.cnes.sitools.dataset.model.Predicat;
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import fr.cnes.sitools.dictionary.model.Concept;
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import fr.cnes.sitools.plugins.resources.model.ResourceModel;
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import fr.cnes.sitools.util.Util;
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import fr.ias.sitools.vo.representation.DatabaseRequestIasModel;
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import freemarker.template.TemplateSequenceModel;
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import java.math.BigInteger;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.logging.Level;
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import java.util.logging.Logger;
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import net.ivoa.xml.votable.v1.AnyTEXT;
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import net.ivoa.xml.votable.v1.DataType;
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import net.ivoa.xml.votable.v1.Field;
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import net.ivoa.xml.votable.v1.Info;
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import net.ivoa.xml.votable.v1.Param;
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import org.restlet.Context;
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class TableAccessProtocolResponse implements TableAccessProtocolDataModelInterface {
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private final transient Map dataModel = new HashMap();
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private final transient Context ctx;
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private final String adqlQuery;
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private transient String psqlQuery;
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private ArrayList<String> colsToQuery = new ArrayList<String>();
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private String clauseWhereToQuery;
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private String clauseLimit;
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private int clauseLimitInt;
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private String format;
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boolean isPrimaryKey;
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public TableAccessProtocolResponse(final TableAccessProtocolInputParameters inputParameters, final ResourceModel model) {
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this.format = inputParameters.getFormat();
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this.adqlQuery = inputParameters.getQuery();
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this.ctx = inputParameters.getContext();
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if(this.adqlQuery == null || this.adqlQuery .equalsIgnoreCase("")){
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}else{
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processQuery();
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createResponse(inputParameters, model);
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}
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}
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private void createResponse(final TableAccessProtocolInputParameters inputParameters, final ResourceModel model){
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final String dictionaryName = model.getParameterByName(TableAccessProtocolLibrary.DICTIONARY).getValue();
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setVotableParametersFromConfiguration(this.dataModel, model);
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setVotableResource(inputParameters.getDatasetApp(), inputParameters, model, dictionaryName);
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setQueryInfos(model);
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}
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private void setVotableResource(final DataSetApplication datasetApp, final TableAccessProtocolInputParameters inputParameters,
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final ResourceModel model, final String dictionaryName) {
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final List<Field> fieldList = new ArrayList<Field>();
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final List<String> columnStringList = new ArrayList<String>();
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final List<Column> columnList = datasetApp.getDataSet().getColumnModel();
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DatabaseRequest databaseRequest = null;
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try {
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List<ColumnConceptMappingDTO> mappingList = getDicoFromConfiguration(datasetApp, dictionaryName);
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final DatabaseRequestParameters dbParams = setQueryParameters(datasetApp, model, inputParameters, mappingList);
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List<Column> listCol = getColumnToQuery(columnList);
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listCol = checkPrimaryKeyAndAddItColTQuery(columnList, listCol);
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dbParams.setSqlVisibleColumns(listCol);
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if(this.clauseLimitInt > 0)
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{
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dbParams.setMaxrows(this.clauseLimitInt);
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}
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databaseRequest = DatabaseRequestFactory.getDatabaseRequest(dbParams);
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databaseRequest.checkRequest();
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databaseRequest.createRequest();
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getCtx().getLogger().log(Level.FINEST, "-------- DB REQUEST : {0}", databaseRequest.getRequestAsString());
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setFields(fieldList, columnStringList, mappingList, listCol);
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final int count = (databaseRequest.getCount() > dbParams.getPaginationExtend()) ? dbParams.getPaginationExtend() : databaseRequest.getCount();
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dataModel.put("nrows", count);
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dataModel.put("fields", fieldList);
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dataModel.put("sqlColAlias", columnStringList);
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final ConverterChained converterChained = datasetApp.getConverterChained();
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final TemplateSequenceModel rows = new DatabaseRequestIasModel(databaseRequest, converterChained);
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dataModel.put("rows", rows);
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} catch (SitoolsException ex) {
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Logger.getLogger(TableAccessProtocolResponse.class.getName()).log(Level.SEVERE, null, ex);
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}
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}
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@SuppressWarnings("empty-statement")
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private DatabaseRequestParameters setQueryParameters(final DataSetApplication datasetApp, final ResourceModel model,
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final TableAccessProtocolInputParameters inputParameters, List<ColumnConceptMappingDTO> mappingList) {
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final DataSetExplorerUtil dsExplorerUtil = new DataSetExplorerUtil(datasetApp, inputParameters.getRequest(),
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inputParameters.getContext());
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final DatabaseRequestParameters dbParams = dsExplorerUtil.getDatabaseParams();
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final int nbRecordsInDataSet = datasetApp.getDataSet().getNbRecords();
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int nbMaxRecords = Integer.valueOf(model.getParameterByName(TableAccessProtocolLibrary.MAX_RECORDS).getValue());
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nbMaxRecords = (nbMaxRecords > nbRecordsInDataSet || nbMaxRecords == -1) ? nbRecordsInDataSet : nbMaxRecords;
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if(this.clauseLimit != null){
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nbMaxRecords = Integer.parseInt(this.clauseLimit);
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}
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dbParams.setPaginationExtend(nbMaxRecords);
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final List<Predicat> predicatList = dbParams.getPredicats();
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Predicat predicat = new Predicat();
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predicat.setStringDefinition(this.clauseWhereToQuery);
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predicatList.add(predicat);
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dbParams.setPredicats(predicatList);
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return dbParams;
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}
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private void setQueryInfos(final ResourceModel model){
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final List<Info> queryInfos = new ArrayList<Info>();
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Info info = new Info();
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info.setName("QUERY_STATUS");
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info.setValueAttribute("OK");
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queryInfos.add(info);
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info = new Info();
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info.setName("ADQL query");
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String query = this.adqlQuery.replaceAll("\"", "").replaceAll(">",">").replaceAll("<","<");
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info.setValueAttribute(query);
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queryInfos.add(info);
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this.dataModel.put("queryInfos", queryInfos);
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}
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private void setVotableParametersFromConfiguration(final Map dataModel, final ResourceModel model) {
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final List<Param> params = new ArrayList<Param>();
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setVotableParam(params, model, TableAccessProtocolLibrary.INSTRUMENT, DataType.CHAR);
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setVotableParam(params, model, TableAccessProtocolLibrary.SERVICE_NAME, DataType.CHAR);
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if (Util.isSet(params)) {
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this.dataModel.put("params", params);
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}
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}
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private void setVotableParam(final List<Param> params, final ResourceModel model, final String parameterName,
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final DataType datatype) {
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final String parameterValue = model.getParameterByName(parameterName).getValue();
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if (Util.isNotEmpty(parameterValue)) {
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final Param param = new Param();
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param.setName(parameterName);
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param.setValue(parameterValue);
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param.setDatatype(datatype);
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params.add(param);
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}
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}
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private List<ColumnConceptMappingDTO> getDicoFromConfiguration(final DataSetApplication datasetApp,
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final String dicoToFind) throws SitoolsException {
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List<ColumnConceptMappingDTO> colConceptMappingDTOList = null;
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final List<DictionaryMappingDTO> dicoMappingList = datasetApp.getDictionaryMappings();
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if (!Util.isSet(dicoMappingList) || dicoMappingList.isEmpty()) {
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throw new SitoolsException("No mapping with VO concepts has been done. please contact the administrator");
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}
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for (DictionaryMappingDTO dicoMappingIter : dicoMappingList) {
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final String dicoName = dicoMappingIter.getDictionaryName();
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if (dicoToFind.equals(dicoName)) {
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colConceptMappingDTOList = dicoMappingIter.getMapping();
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break;
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}
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}
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return colConceptMappingDTOList;
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}
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private List<Column> getColumnToQuery(List<Column> columnList){
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List<Column> colsToQueryList = new ArrayList<Column>();
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String all = this.adqlQuery.split(TableAccessProtocolLibrary.SELECT)[1].split(TableAccessProtocolLibrary.FROM)[0];
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if(this.colsToQuery.size() == 1 && all.contains("*")){
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for(Column colCol : columnList){
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colsToQueryList.add(colCol);
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}
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return colsToQueryList;
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}
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for(String col : this.colsToQuery){
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for(Column colCol : columnList){
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if(col.equalsIgnoreCase(colCol.getColumnAlias())){
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colsToQueryList.add(colCol);
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}
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}
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}
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return colsToQueryList;
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}
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private void setFields(final List<Field> fieldList, final List<String> columnList, final List<ColumnConceptMappingDTO> mappingList, final List<Column> colToQuery) {
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List<Column> colToQuery2 = colToQuery;
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if(!isPrimaryKey){
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colToQuery2.remove(colToQuery2.size()-1);
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}
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for(Column col : colToQuery2){
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for (ColumnConceptMappingDTO mappingIter : mappingList) {
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if(col.getColumnAlias().equalsIgnoreCase(mappingIter.getColumnAlias())){
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String id = null;
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String name = null;
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String ucd = null;
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String utype = null;
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String ref = null;
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String datatype = null;
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String width = null;
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String precision = null;
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String unit = null;
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String type = null;
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String xtype = null;
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String arraysize = null;
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String descriptionValue = null;
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columnList.add(mappingIter.getColumnAlias());
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final Concept concept = mappingIter.getConcept();
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if (concept.getName() != null) {
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name = concept.getName();
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}
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if (concept.getPropertyFromName("ID").getValue() != null) {
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id = concept.getPropertyFromName("ID").getValue();
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}
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if (concept.getPropertyFromName("ucd").getValue() != null) {
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ucd = concept.getPropertyFromName("ucd").getValue();
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}
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if (concept.getPropertyFromName("utype").getValue() != null) {
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utype = concept.getPropertyFromName("utype").getValue();
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}
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if (concept.getPropertyFromName("ref").getValue() != null) {
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ref = concept.getPropertyFromName("ref").getValue();
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}
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if (concept.getPropertyFromName("datatype").getValue() != null) {
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datatype = concept.getPropertyFromName("datatype").getValue();
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}
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if (concept.getPropertyFromName("width").getValue() != null) {
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width = concept.getPropertyFromName("width").getValue();
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}
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if (concept.getPropertyFromName("precision").getValue() != null) {
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precision = concept.getPropertyFromName("precision").getValue();
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}
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if (concept.getPropertyFromName("unit").getValue() != null) {
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unit = concept.getPropertyFromName("unit").getValue();
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}
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if (concept.getPropertyFromName("type").getValue() != null) {
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type = concept.getPropertyFromName("type").getValue();
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}
|
383 |
|
|
if (concept.getPropertyFromName("xtype").getValue() != null) {
|
384 |
|
|
xtype = concept.getPropertyFromName("xtype").getValue();
|
385 |
|
|
}
|
386 |
|
|
if (concept.getPropertyFromName("arraysize").getValue() != null) {
|
387 |
|
|
arraysize = concept.getPropertyFromName("arraysize").getValue();
|
388 |
|
|
}
|
389 |
|
|
if (concept.getDescription() != null) {
|
390 |
|
|
descriptionValue = concept.getDescription();
|
391 |
|
|
}
|
392 |
|
|
final Field field = new Field();
|
393 |
|
|
field.setID(id);
|
394 |
|
|
field.setName(name);
|
395 |
|
|
field.setUcd(ucd);
|
396 |
|
|
field.setUtype(utype);
|
397 |
|
|
field.setRef(ref);
|
398 |
|
|
field.setDatatype(DataType.fromValue(datatype));
|
399 |
|
|
if (width != null) {
|
400 |
|
|
field.setWidth(BigInteger.valueOf(Long.valueOf(width)));
|
401 |
|
|
}
|
402 |
|
|
field.setPrecision(precision);
|
403 |
|
|
field.setUnit(unit);
|
404 |
|
|
field.setType(type);
|
405 |
|
|
field.setXtype(xtype);
|
406 |
|
|
field.setArraysize(arraysize);
|
407 |
|
|
final AnyTEXT anyText = new AnyTEXT();
|
408 |
|
|
anyText.getContent().add(descriptionValue);
|
409 |
|
|
field.setDESCRIPTION(anyText);
|
410 |
|
|
fieldList.add(field);
|
411 |
|
|
}
|
412 |
|
|
}
|
413 |
|
|
}
|
414 |
|
|
}
|
415 |
|
|
|
416 |
|
|
private List<Column> checkPrimaryKeyAndAddItColTQuery(List<Column> columnList, List<Column> colToQuery){
|
417 |
|
|
Column colPrimKey = null;
|
418 |
|
|
for(Column co : columnList){
|
419 |
|
|
if(co.isPrimaryKey()){
|
420 |
|
|
colPrimKey = co;
|
421 |
|
|
}
|
422 |
|
|
}
|
423 |
|
|
for(Column col : colToQuery){
|
424 |
|
|
if(col.isPrimaryKey()){
|
425 |
|
|
isPrimaryKey = true;
|
426 |
|
|
}
|
427 |
|
|
}
|
428 |
|
|
if(!isPrimaryKey && "" != colPrimKey.getColumnAlias()){
|
429 |
|
|
colToQuery.add(colPrimKey);
|
430 |
|
|
}
|
431 |
|
|
|
432 |
|
|
return colToQuery;
|
433 |
|
|
}
|
434 |
|
|
|
435 |
|
|
private void processQuery(){
|
436 |
|
|
try {
|
437 |
|
|
|
438 |
|
|
ADQLParser parser = new ADQLParser();
|
439 |
|
|
ADQLQuery adqlQueryValue = parser.parseQuery(this.adqlQuery);
|
440 |
|
|
|
441 |
|
|
ADQLTranslator translator = new PostgreSQLTranslator();
|
442 |
|
|
|
443 |
|
|
this.psqlQuery = translator.translate(adqlQueryValue);
|
444 |
|
|
ctx.getLogger().log(Level.SEVERE, "#### ADQL request : "+this.adqlQuery);
|
445 |
|
|
ctx.getLogger().log(Level.SEVERE, "#### PSQL request : "+this.psqlQuery);
|
446 |
|
|
|
447 |
|
|
if(this.psqlQuery.contains("Limit ")){
|
448 |
|
|
this.clauseLimit = this.psqlQuery.split("Limit ")[1];
|
449 |
|
|
this.clauseLimitInt = Integer.parseInt(this.clauseLimit.replaceAll(" ", ""));
|
450 |
|
|
this.psqlQuery = this.psqlQuery.split("Limit ")[0];
|
451 |
|
|
}else{
|
452 |
|
|
this.clauseLimit = null;
|
453 |
|
|
this.clauseLimitInt = -1;
|
454 |
|
|
}
|
455 |
|
|
|
456 |
|
|
this.clauseWhereToQuery = "AND"+ this.psqlQuery.split(TableAccessProtocolLibrary.FROM)[1].split(TableAccessProtocolLibrary.WHERE)[1];
|
457 |
|
|
|
458 |
|
|
String[] colsToQueryTmp = this.psqlQuery.split(TableAccessProtocolLibrary.FROM)[0].split(TableAccessProtocolLibrary.SELECT)[1].split(",");
|
459 |
|
|
for(String col : colsToQueryTmp){
|
460 |
|
|
if(col.equalsIgnoreCase(TableAccessProtocolLibrary.SELECT_ALL)){
|
461 |
|
|
colsToQuery.add(col.replaceAll(TableAccessProtocolLibrary.BLANCK, ""));
|
462 |
|
|
break;
|
463 |
|
|
}else{
|
464 |
|
|
colsToQuery.add(col.split("AS")[0].replaceAll(TableAccessProtocolLibrary.BLANCK, ""));
|
465 |
|
|
}
|
466 |
|
|
}
|
467 |
|
|
if(format == null || format.equalsIgnoreCase("")){
|
468 |
|
|
|
469 |
|
|
}else{
|
470 |
|
|
ctx.getLogger().log(Level.INFO, "format = "+format);
|
471 |
|
|
}
|
472 |
|
|
} catch (TranslationException ex) {
|
473 |
|
|
Logger.getLogger(TableAccessProtocolResponse.class.getName()).log(Level.SEVERE, null, ex);
|
474 |
|
|
} catch (ParseException ex) {
|
475 |
|
|
Logger.getLogger(TableAccessProtocolResponse.class.getName()).log(Level.SEVERE, null, ex);
|
476 |
|
|
}
|
477 |
|
|
}
|
478 |
|
|
@Override
|
479 |
|
|
public final Map getDataModel() {
|
480 |
|
|
return Collections.unmodifiableMap(this.dataModel);
|
481 |
|
|
}
|
482 |
|
|
|
483 |
|
|
|
484 |
|
|
public Context getCtx() {
|
485 |
|
|
return ctx;
|
486 |
|
|
}
|
487 |
|
|
} |